Have you ever been on a walk and observed an interesting plant you couldn't identify? Encountered an unusual insect trapped in your home? Have you wondered why you used to see certain species in nature and you don't now? Or have you thought it might be neat to compile a species list for a special place, like a favorite park or your own backyard? All California Naturalists already know that there's an app (and website) for all that!
What is iNaturalist?
The free iNaturalist app is an online social network of people sharing biodiversity information to help each other learn about nature. Available for android, iPhone, and by a website, iNaturalist is a joint initiative by the California Academy of Sciences and the National Geographic Society that allows users to upload one or more pictures, provide a location, and make relevant notes like whether the subject is captivate or wild.
In response, the artificial intelligence in the app suggests what the species might be based on visual similarity and whether the species has been observed nearby. Members and organizations can set up projects and download data within defined taxa or locations to follow presence and absence, abundance, seasonality and change over time.
Verified observations are sent to the Global Biodiversity Information Facility, an international network and research infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on earth. Valuable open-source data is available to aid scientific research, government and conservation organizations, and the interested public. Nearly instant gratification for species ID combined with the ability of members to contribute to a greater good whenever they venture outdoors are huge motivators for much of the existing iNaturalist community, which currently exceeds one million users and 14 million observations.
iNaturalist observations and the upcoming City Nature Challenge
One of the biggest BioBlitzes naturalists and others can participate in is the annual City Nature Challenge. The City Nature Challenge — essentially a four-day global urban bioblitz — began in 2016 as a friendly nature-observation competition between the San Francisco Bay Area and Los Angeles County, organized around a simple charge: “which city can find the most nature?” Participants use the iNaturalist app to photograph, catalog, identify and organize observations of wildlife in their areas. The city with the highest number of observations wins. Since the first challenge, the competition has expanded rapidly, and this year more than 150 cities will participate worldwide.
How does it work?
The City Nature Challenge takes place April 26-29, 2019. During this window, anyone can contribute observations via iNaturalist. There will are also be a variety of events organized to help cities win the challenge. Cities are competing against each other to see which city can make the most observations of nature, find the most species, and engage the most people. At the end of the observation window on April 29, other events will be held to help participants identify and complete their observations in iNaturalist.
How can we participate in 2019?
The UC Agriculture and Natural Resources' California Naturalist program is teaming up with the UC Davis School of Education's Center for Community and Citizen Science, UC Davis Evolution and Ecology Department, and other partners in the region to put the Sacramento region in the competition for the first time. Stay updated and learn more information about how to join the fun on the Sacramento City Nature Challenge website as we add events. Experienced and beginner naturalists alike are invited to attend these events.
For those outside of the Sacramento region, participate in the Natural History Museum of LA County's Los Angeles County City Nature Challenge, San Diego Natural History Museum's San Diego County City Nature Challenge, and the California Academy of Sciences' San Francisco Bay Area City Nature Challenge. All you have to do is log in to your account and join the project. Any observations uploaded from within the project boundaries from April 26-29 are automatically contributed to the challenge.
Last year, 6 percent of the nearly 7 billion total observations uploaded to iNaturalist were contributed during the City Nature Challenge, making the challenge the single-most uploaded period of 2018. With the City Nature Challenge growing internationally in 2019, even more observations will be added in the hopes of getting more people outside, engaging with the natural spaces within urban environments, spending time with fellow nature enthusiasts and community organizations, and learning and contributing to science.
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In 2014, plant biologists with the California Department of Agriculture reported an alarming discovery: native wildflowers and herbs, grown in nurseries and then planted in ecological restoration sites around California, were infected with Phytophthora tentaculata, a deadly exotic plant pathogen that causes root and stem rot.
While ecologists have long been wary of exotic plant pathogens borne on imported ornamental plants, this was the first time in California that these microorganisms had been found in native plants used in restoration efforts. Their presence in restoration sites raised the frightening possibility that ecological restoration, rather than returning disturbed sites to their natural beauty, may actually be introducing deadly plant pathogens, such as those related to Sudden Oak Death, into the wild.
New work by a UC Berkeley team in the College of Natural Resources shows for the first time just how widespread and deadly the threat of pathogens from restoration nurseries may be.
The team surveyed five native plant nurseries in Northern California and found that four harbored exotic, or non-native, Phytophthora pathogens. Strains of the pathogens from native plant nurseries were shown to be at times more aggressive than strains found in the wild, and some of them are rapidly developing resistance to the fungicides that can be used to control them, the researchers found.
Working with restoration nurseries around the state, the researchers showed that new management techniques, coupled with new methods for detecting pathogens, can help these nurseries limit the spread of exotic pathogens.
"Some of these restoration projects cost tens of millions of dollars, but of course their actual value is much higher, because of the wealth of services healthy natural ecosystems provide, including supporting animal and plant biodiversity, providing good water and air quality, and enjoyable recreation sites," said Matteo Garbelotto, UC Cooperative Extension specialist and adjunct professor of environmental science, policy and management at UC Berkeley.
"Such services are highly diminished in ecosystems affected by exotic plant diseases, while water runoff and erosion, the establishment of exotic plants and animals, and even hotter wildfires may increase in conjunction with disease outbreaks in natural ecosystems," Garbelotto said.
Pathogens evolve to outwit fungicides
Bacteria that make humans sick are constantly evolving to resist the antibiotics designed to fight them, and resistance to fungicides has been documented in microbes causing diseases in agricultural plants. Garbelotto and his team wanted to know if the widespread use of fungicides in in native and ornamental plant nurseries could also accelerate the development of fungicide-resistance in plant pathogens.
Their research was spurred in part by their discovery of a new strain of the Sudden Oak Death pathogen in Oregon forests that is highly tolerant of a fungicide commonly known as phosphite, one of the main weapons used against plant parasites in the wild because its application does not cause any known negative environmental side effects.
Together with a group of New Zealand researchers, they decided to study fungicide resistance of Phytophthora -- a genus of plant pathogens that can case lethal cankers and root rot -- to two important fungicides, including phosphite.
The researchers gathered numerous samples of Phytophthora from 11 species present both in forests and plant nurseries. They then tested the sensitivity to phosphite of multiple individuals per species.
While most of the species tested were overall still sensitive to phosphite, strains of four species were able to resist the effects of the chemical, the researchers report in PLOS ONE. These include Phytophthora ramorum, the parasite behind Sudden Oak Death in North America and Sudden Larch Death in Europe, and Phytophthora crassamura, a species first discovered recently by the same UC Berkeley researchers in native plant nurseries and restoration sites in California.
Some strains within each of these four species, although genetically almost identical to strains still susceptible to phosphite, were resistant to it. The presence of chemical tolerance or chemical sensitivity when comparing nearly genetically identical strains suggests that the development of resistance occurred relatively recently, perhaps in response to the widespread use of phosphites in native and ornamental nurseries, Garbelotto said.
"These pathogens can be literally flooded with these chemicals in plant production facilities, and at the beginning of the study, we hypothesized that in such predicaments these pathogens would be forced to evolve resistance" Garbelotto said. "Indeed, our hypothesis was correct, and we found that some of them evolved the ability to tolerate exposure to phosphite."
While phosphite can still help to spur a plant's immune system, this may not be enough to quell the spread of the disease, Garbelotto said.
"By pressuring these pathogens to evolve resistance to phosphites, we are effectively taking out phosphite as a potential tool to manage these disease outbreaks," Garbelotto said. "Furthermore, the ability to quickly develop tolerance to a fungicide may be an indication these pathogens can adapt quickly to new environments. Thus, they may become formidable invasive organisms, infesting larger swaths of natural areas and causing significant disease and mortality of essential native flora."
A widespread - but reparable - problem.
Since the first discovery of Phytophthora in California restoration sites, research by the UC Berkeley team and others have traced the deaths of wild trees and plants back to strains of the pathogen originating in native plant nurseries, rather than strains already found in the wild. However, few studies have documented just how prevalent the problem is.
In a recent study published in the journal Plant Pathology, UC Berkeley researchers examined 203 individual plants across five restoration nurseries in California and found that 55 of the plants were infected with Phytophthora.
"We were able to prove that this is a widespread problem in California," Garbelotto said. "Most of the stock that they used is infested, and the levels were very high. For some species more than 50 percent of the plants we tested were infected."
The team then worked with the infected nurseries to implement new best management practices to try to limit the spread of disease without the use of phosphite or of other fungicides. These simple guidelines, which included more careful management of water runoff and soil to reduce cross contamination, reduced the prevalence of disease to nearly zero a year after implementation.
"We were able to prove that after a year of following the guidelines, those facilities were clear of pathogens, and other facilities that did not follow the guidelines still had the pathogens," Garbelotto said. "As a result of these findings, people are now putting a lot of money and effort into making sure that the plants are clean, by following similar guidelines and by making sure that no fungicides are used to avoid the development of resistance."
Co-authors on the PLOS ONE study are Shannon Hunter of the University of Waikato in New Zealand and Nari Williams, Rebecca McDougal and Peter Scott of Forest Protection in New Zealand. Co-authors on the Plant Pathology study are L. Sims of UC Berkeley and S. Tjosvold and D. Chambers of the University of California Cooperative Extension.
This research was supported by the Endemic and Invasive Pests and Diseases Strategic Initiative of the University of California, Agriculture and Natural Resources; and by the San Francisco Public Utilities Commission in collaboration with the U.S. Forest Service (Region 5).
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